Assoc.Prof.Dr. TREENUT SAITHONG

Work Affiliations

Strategic Research Themes

Publications

  

  

  

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• ● Genomic and transcriptomic analysis identified novel putative cassava lncRNAs involved in cold and drought stress; Suksamran, Rungaroon; Saithong, Treenut; Thammarongtham, et al.; 2020; Journal article
• ● Modeling metabolic fluxes underlying cassava storage root growth through E-Fmin analysis; Kamsen, Ratchaprapa; Kalapanulak, Saowalak; Saithong, et al.; 2020; Conference proceedings article
• ● Development of a compartmentalized model for insight into the structured metabolic pathway of carbon metabolism in cassava leaves; Punyasu N., Kalapanulak S., Siriwat W., et al.; 2019; Journal article
• ● Difference in defense mechanism of two cassava cultivars to bacterial blight disease inferred by analysis of interspecies protein-protein interaction networks; Ratana Thanasomboon;Ratana Thanasomboon;Saowalak Kalapanulak;Saowalak Kalapanulak;Supatcharee Netrphan;Treenut Saithong;Treenut Saithong; 2019; Journal article
• ● Extended utilization of constraint-based metabolic model in a long-growing crop; Chiewchankaset P., Kalapanulak S., Saithong T.; 2019; Journal article
• ● Genome-Wide Identification of Putative MicroRNAs in Cassava (Manihot esculenta Crantz) and Their Functional Landscape in Cellular Regulation; Yawichai A., Kalapanulak S., Thammarongtham C., et al.; 2019; Journal article
• ● Pan- and core- gene association networks: Integrative approaches to understanding biological regulation; Wirojsirasak W., Kalapanulak S., Saithong T.; 2019; Journal article
• ● Understanding carbon utilization routes between high and low starch-producing cultivars of cassava through Flux Balance Analysis; Chiewchankaset P., Siriwat W., Suksangpanomrung M., et al.; 2019; Journal article
• ● Unlocking conserved and diverged metabolic characteristics in cassava carbon assimilation via comparative genomics approach; Siriwat W., Kalapanulak S., Suksangpanomrung M., et al.; 2018; Journal article
• ● Networking omic data to envisage systems biological regulation; Kalapanulak S., Saithong T., Thammarongtham C.; 2017; Book chapter abstract
• ● Prediction of cassava protein interactome based on interolog method; Thanasomboon R., Kalapanulak S., Netrphan S., et al.; 2017; Journal article
• ● Gene co-expression analysis inferring the crosstalk of ethylene and gibberellin in modulating the transcriptional acclimation of cassava root growth in different seasons; Saithong T., Saerue S., Kalapanulak S., et al.; 2015; Journal article
• ● Genome-wide analysis reveals phytohormone action during cassava storage root initiation; Sojikul P., Saithong T., Kalapanulak S., et al.; 2015; Journal article
• ● Going Beyond the Current Native Nutritional Food Through the Integration of the Omic Data in the Post-Genomic Era: A Study in (Resistant) Starch Systems Biology; Saithong T., Kalapanulak S.; 2015; Book chapter abstract
• ● Starch biosynthesis in cassava: A genome-based pathway reconstruction and its exploitation in data integration; Saithong T., Rongsirikul O., Kalapanulak S., et al.; 2013; Journal article
• ● Transcriptional regulatory network of Arabidopsis starch metabolism under extensive light condition: A potential model of transcription-modulated starch metabolism in roots of starchy crops; Bumee S., Ingkasuwan P., Kalapanulak S., et al.; 2013; Conference proceedings article
• ● Analysis and practical guideline of constraint-based boolean method in genetic network inference; Saithong T., Bumee S., Liamwirat C., et al.; 2012; Journal article
• ● Transcriptomic data integration inferring the dominance of starch biosynthesis in carbon utilization of developing cassava roots; Siriwat W., Kalapanulak S., Suksangpanomrung M., et al.; 2012; Conference proceedings article
• ● Consistent Robustness Analysis (CRA) Identifies Biologically Relevant Properties of Regulatory Network Models; Saithong T., Painter K.J., Millar A.J.; 2010; Journal article
• ● Extended constraint-based boolean analysis: A computational method in genetic network inference; Bumee S., Liamwirat C., Saithong T., et al.; 2010; Conference proceedings article

Expertise

  

  

  

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• Biological Network Construction from High-Throughput Data
• Carbon Capture, Utilization, and Storage (CCUS)
• Carbon conversion & allocation for biomass (products) production in microorganism and plants
• Carbon Sequestration and Carbon Farming
• Carbon source-sink (shoot-root) allocation
• Climate-Smart Agriculture
• Decision Support Systems
• Genome-Scale Metabolic Models and Genetic Networks
• Genotype-Phenotype Relationship
• Mathematical modelling & omics data integration
• Metabolic Engineering
• Model Analysis
• Model-based design for synthetic biology
• Model-design Precision Fermentation
• Multi-Level Regulation in Plants
• Optimization Methods for Biological Modeling
• Plant Growth with Resource Efficiency
• Plant-Microbe Interactions
• Precision Farming (Agriculture)
• System regulation